CAP Pro Course - Microbiology - Microbiology of the Gastrointestinal Tract (2025 & 2026)

Author: Julie Ann West, PhD, MLS(ASCP)CMSMCM
Reviewer: Laurie Bjerklie, MA, MLS(ASCP)CM

Continuing Education Credits

Objectives

  • Identify clinical pathogens associated with common gastrointestinal tract infections.
  • Compare and contrast various methods of specimen collection, specimen transport, and specimen storage for gastrointestinal pathogen testing.
  • Outline common clinical testing methods used to identify gastrointestinal pathogens.
  • Analyze communication tools used for reporting results of gastrointestinal pathogen testing and their effectiveness in preventing the spread of identified gastrointestinal pathogens.

Course Outline

  • Identify clinical pathogens associated with common gastrointestinal tract infections.
      • Common Causes of GI Tract Infections: General Information
      • Common GI Pathogens: Sources of Infection, Incubation Periods, Symptoms, and Treatment
      • Dominant Pathogens Associated with Specific GI Tract Anatomical Sites
      • You are training a new employee in the microbiology department, and she asks for more information on the clinical symptoms associated with Salmonella ...
      • A patient presents to the emergency department with symptoms indicative of a lower GI tract infection, including fever, malaise, vomiting, and diarrhe...
      • Common enteric pathogens, including Salmonella and Shigella, are likely to be isolated from which one of the following GI tract sites?
      • Which symptom is most generally associated with all of the common GI pathogens?
  • Compare and contrast various methods of specimen collection, specimen transport, and specimen storage for gastrointestinal pathogen testing.
      • Specimen Collection, Transport, Storage, and Volume Requirements
      • Stool Specimen Guide
      • Specimen Processing
      • For which of the following requests might a rectal swab be acceptable?
      • A 60-year-old man presents to his physician's office complaining of abdominal pain and diarrhea that began about 16 hours ago. The physician suspects ...
      • Mariah, a medical laboratory scientist (MLS) in the microbiology department, receives a call from an emergency department (ED) physician requesting gu...
      • When instructed to do so by the laboratory, stool specimens submitted for viral culture testing should be transported in which one of the following?
      • In general for a specific test request, such as a stool culture or ova and parasites (O&P) examination, how many stool samples should be accepted ...
  • Outline common clinical testing methods used to identify gastrointestinal pathogens.
      • Quick Reference Guide to Identification of Common Pathogens
      • Standard Culture Methods of Identification: Aeromonas and Plesiomonas
      • Standard Culture Methods for Identification: Campylobacter
      • Standard Culture Methods for Identification: E. coli O157:H7 and Clostridioides difficile
      • Standard Culture Methods for Identification: Salmonella and Shigella
      • Standard Culture Methods for Identification: Yersinia and Vibrio
      • Standard Identification Methods: Intoxication (Staphylococcus aureus, Clostridium botulinum, and Bacillus cereus)
      • Standard Methods for Identification: Parasites and Viruses
      • Non-Culture Testing Methods for Gastrointestinal (GI) Pathogens
      • Which media is enhanced specifically for the recovery of Yersinia enterocolitica from a patient with gastroenteritis?
      • What diagnostic laboratory assay is considered the "gold standard" for the identification of GI-associated disorders when a suspected organism is unkn...
      • You receive a stool sample from a public health department laboratory employee who is experiencing severe abdominal pain and diarrhea that has led to ...
      • A 67-year-old female patient has been in the hospital for the last week due to sepsis from an untreated urinary tract infection (UTI) caused by Escher...
      • Abdominal pain, fever, vomiting, and nausea prompted an elderly male to seek medical attention. A watery stool specimen producing no fecal leukocytes ...
      • Four blood cultures were taken over a 24-hour period from a 20-year-old woman with severe diarrhea. The cultures were flagged as positive by the autom...
  • Analyze communication tools used for reporting results of gastrointestinal pathogen testing and their effectiveness in preventing the spread of identified gastrointestinal pathogens.
      • Preliminary versus Final Result Reporting and Expected Turnaround Times
      • Reports: Hospital Infection Control and Public Health Agencies
      • Public health agencies are responsible for monitoring cases of notifiable diseases to ensure public safety. Your microbiology laboratory is performing...
      • While updating the reporting methods in your laboratory information system (LIS), you determine that due to the current reporting practice, physicians...
      • A physician calls to inquire about how long the results from the routine stool culture will take on their patient. You tell them that in your laborato...
  • References
      • References

Additional Information

Level of Instruction: Intermediate
Intended Audience: This program is designed as an educational and training tool for medical laboratory scientists, medical laboratory technicians, laboratory supervisors, and laboratory managers, as well as medical laboratory science students, pathology residents, and practicing pathologists.
Author Information: Dr. Julie Ann West is certified by the American Society for Clinical Pathology (ASCP) as a Medical Laboratory Scientist (MLS) and as a Specialist in Microbiology (SM). In addition, Dr. West has earned a PhD in Public Health - Infectious Disease Epidemiology - and is Certified in Public Health (CPH) by the National Board of Public Health Examiners. Dr. West is experienced as a Technical Specialist, Safety Officer, Educator, and Lead in the Veterans Administration Healthcare System and has prior experience as an Administrative Laboratory Director.
Reviewer Information: Laurie Bjerklie, MA, MLS(ASCP)CM, is an Education Developer. She earned a B.S. in Medical Laboratory Science from the University of North Dakota and an M.A. in Curriculum and Instruction from Saint Xavier University. She has over 15 years of experience in higher education and has held program director and faculty positions in both MLT and MLS programs.

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